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    Research Software Engineer - Providence, United States - Masaryk University

    Masaryk University
    Masaryk University Providence, United States

    3 weeks ago

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    Description
    Bursar of the Faculty of Science, Masaryk University, announces an open competition for the position
    Research software engineer

    Workplace:

    RECETOX, Faculty of Science, Masaryk University in Brno, Czech Republic

    Type of Contract:

    temporary position with a1-year contract (with possible extension), non-academic
    Working Hours

    :
    1,0 FTE (full-time employment of 40 hours per week)
    Expected Start Date

    :

    negotiable with respect to immigration timelines for non-EU candidates

    Number of Open Positions
    :

    1

    Pay:

    CZK CZK per month

    Application Deadline:

    EU Researcher Profile

    :

    R1-R2
    About the Workplace
    Masaryk University

    is amodern, dynamic and the most attractive university in the Czech Republic with ten faculties, more than 6500 staff and 33000 students,

    a wide range of research areas and astrong international position

    .

    We are the largest academic employer in the South Moravian Region.
    F

    aculty of Science


    MU
    ,

    holder of the

    HR Excellence in Research Award

    by the European Commission, is aresearch-oriented faculty, offering university education (Bachelor's, Master's, and Doctoral degree programs) closely linked to both primary and applied research and high school teaching of the following sciences:

    Mathematics, Physics, Chemistry, Biology, and Earth sciences

    . We are

    the most productive scientific unit of Masaryk University, generating around 40 % of
    MUresearch results.

    RECETOX


    focuses on interdisciplinary research and education in the area of Environment & Health, studying toxic compounds and their behaviour, transport & bioaccumulation to evaluate environmental effects, assess the exposure and health risks to humans, and develop technologies and biotechnologies to break them down.

    Job Description

    We seek amotivated research software engineer (RSE) with solid technological and scientific background who combines expertise in software development and methodology with deep knowledge of one or more research fields.

    The overarching goal is to develop software packages and Galaxy tools to process mass spectrometry data for the identification and quantification of small molecules (e.g pesticides and other environmental pollutants) in biospecimen to understand the interactions of the environment and health as part of the newly established Environmental Exposure Assessment Research Infrastructure (


    EIRENE
    ).

    The
    EIRENERI mission is to establish asustainable research infrastructure enabling the advancement of exposome research in Europe by bringing together complementary capacities available in the member states, harmonizing them and upgrading to address current scientific and societal challenges in the areas of chemical exposures and population health.

    We emphasize on sustainable, long-term and open developments and rely on professional standards to obtain reproducible results. As part of our international and multidisciplinary team in the

    Spectrometric Data Processing and Analysis


    Research Infrastructure (RI), you will implement robust and well tested software (mostly R & Python) and contribute to open-source projects with respective methodologies (pull requests, code reviews, etc.).

    As an RSE, you will also focus on best practices, including documentation, licensing, archiving, version control and testing of research software, as well as (supporting) the development and maintenance of existing software and workflows.

    The position offers time flexibility, ahigh level of interdisciplinarity within fields of applied informatics, bioinformatics and analytical chemistry with avast potential for the development of your expertise.

    As being part of the RI, the position offers aunique opportunity for long term engagement in the academic field and potential for international collaboration with other European RIs.


    Key Duties:
    To take aleading role in re-using and developing complex methodologies, applications and software of internationally recognized quality, with aview to answering complex research questions and promoting the sustainable use of eScience Technologies
    Safeguard the quality of the eScience components within projects, including design, documentation and testing
    Continuous communication with the scientists & users to understand the problem to be solved
    Informal algorithm specifications and requirements engineering with internal & external stakeholders
    Engagement in open-source projects with external partners
    Creating presentations for internal & external use (e.g workshops, conferences, ...)
    Skills and Qualifications

    The applicant must have:
    Knowledge at the level of amaster's degree in computational disciplines (in natural sciences) and affinity with academic research
    Experience in collaborative software development and research-oriented digital methodologies

    The applicant should have:
    Creativity, open mind, continuous search for improvements, innovative thinking
    Ongoing self-education as part of the job
    Extensive engagement in collaborative software development tasks (code reviews, documentation writing, upstream contributions)
    Ability to travel abroad for meetings, workshops and conferences

    Beneficial to have/know:
    Knowledge of additional programming languages (Java, C++, C#, Julia)
    Experience with the following frameworks/technologies:

    Workflow Engines (e.g. Galaxy), Containers (e.g. Docker), Package Managers (e.g. Conda, CRAN)
    Experience in mass spectrometry data processing or other domain knowledge
    Working experience as asoftware engineer (or comparable) in industry
    We Offer
    The dynamic group surrounded by an international team of experts
    Involvement in national and international projects
    An interesting job in adynamically expanding university area
    Flexible working hours and occasional home office to support personal needs in family and career compatibility
    Employee benefits such as 6 weeks of paid vacation per year, pension insurance contribution or nursery/children ́s group allowance,

    a financial meal allowance, lunches in canteens of MU, Multisport card, vaccinations free of charge, discounted language courses

    , exclusive mobile tariff offer by Vodafone, childcare groups at Campus and Komenského náměstí
    The application shall be

    submitted online by via an e-application,

    please find the reference to the e-application in the beginning and end of the advertisement.

    The candidate shall provide following:
    CV
    Cover letter describing candidate'sresearch interest and experience
    Summary of research outputs and publications
    Summary of publications and research outputs
    Names and contact details of professional referees
    After submitting your application successfully, you will receive an automatic confirmation email from In case of problems with filling in the e-application form, please contact us by e-mail:

    rcx-

    .
    Shortlisted candidates will be invited for apersonal or online interview.
    The Faculty Recruitment Policy (OTM-R) can be seen

    here

    .
    Faculty of Science, Masaryk University is an equal opportunity employer. We support diversity and are committed to creating an inclusive environment for all employees.

    Visit our Career page

    .
    We are looking forward to hearing from you

    #J-18808-Ljbffr
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